PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G110500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 373aa    MW: 40849.8 Da    PI: 8.6821
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G110500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.2e-1168120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++g+++A+++d    + +r +r + g++ t+e Aa+ ++ a++k++g
  Brast01G110500.1.p  68 SVYRGVSRHRSSGKYEAHLWD----KrVRdRRGRQGSYHTEEAAARTYDLAALKYWG 120
                         78*******************....3334688888********************98 PP

2AP250.26.4e-16164215155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV  ++++grW+A+I       g +k+ +lg+fgt eeAa+a++ a+ + +g
  Brast01G110500.1.p 164 SKYRGVAKHHQNGRWEARIGYaS---G-KKYLYLGTFGTQEEAARAYDLAAIQRRG 215
                         89****************76633...3.6*********************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-1468131IPR016177DNA-binding domain
CDDcd000185.55E-1368130No hitNo description
PfamPF008471.5E-868120IPR001471AP2/ERF domain
PROSITE profilePS5103218.6569129IPR001471AP2/ERF domain
SMARTSM003802.0E-1369135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-1469130IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17164224IPR016177DNA-binding domain
PfamPF008477.0E-12164215IPR001471AP2/ERF domain
CDDcd000187.34E-21164224No hitNo description
SMARTSM003801.3E-24165229IPR001471AP2/ERF domain
PROSITE profilePS5103217.675165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-17165223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTANKKPRCA CGGVAAPTTP LSPVSSSASS WGSRIVPSSR PARSHKKNKA RARSGIGDAV  60
LVPMRGSSVY RGVSRHRSSG KYEAHLWDKR VRDRRGRQGS YHTEEAAART YDLAALKYWG  120
SDCVLLNFPV ETYKQECERM QHMTREEYIA SLRRMSSGFT KGVSKYRGVA KHHQNGRWEA  180
RIGYASGKKY LYLGTFGTQE EAARAYDLAA IQRRGLGAVT NFDVRCYTDE HLRVQPLPRC  240
SGKAEPDPEP EPEPAAAARP CPAPLQPKME PGLDVVEPAA PALRGDTDED EDVDRAIAEV  300
LRALCVDRAD FEARYPPRRA GAASAIWPDD VRDLPGHAGF EDDIESALFA DAADVQAAAW  360
LSSASKYNSE LA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754135.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6PQQ35e-68AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0Q3RB150.0A0A0Q3RB15_BRADI; Uncharacterized protein
TrEMBLI1HSQ10.0I1HSQ1_BRADI; Uncharacterized protein
STRINGBRADI2G53070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-69AP2 family protein